1. Yuanchun Zhao, Xingqi Chen, Jiajia Chen, Xin Qi*. Decoding Connectivity Map-based drug repurposing for oncotherapy. Briefings in bioinformatics, 2023, doi: 10.1093/bib/bbad142. 2. Xin Qi, Yuxin Lin, Jiajia Chen, Bairong Shen*. The landscape of emerging ceRNA crosstalks in colorectal cancer: Systems biological perspectives and translational applications. Clinical and translational medicine, 2020, 10(4). 3. Xin Qi#, Yuxin Lin#, Xingyun Liu, Jiajia Chen and Bairong Shen*. Biomarker discovery for the carcinogenic heterogeneity between colon and rectal cancers based on lncRNA-associated ceRNA network analysis. Frontiers in oncology, 2020, 10: 2345. 4. Xin Qi#, Chunjiang Yu#, Yi Wang, Yuxin Lin, Bairong Shen*. Network vulnerability-based and knowledge-guided identification of microRNA biomarkers indicating platinum resistance in high-grade serous ovarian cancer. Clinical and translational medicine, 2019, 8(1): 1-11. 5. Xin Qi#, Yuxin Lin#, Jiajia Chen, Bairong Shen*. Decoding competing endogenous RNA networks for cancer biomarker discovery. Briefings in bioinformatics, 2020, 21(2): 441-457. 6. Xin Qi, Shixue Li, Yaxi Zhu, Qian Zhao, Dengyun Zhu, Jingjuan Yu*. ZmDof3, a maize endosperm-specific Dof protein gene, regulates starch, accumulation and aleurone development in maize endosperm. Plant Molecular Biology, 2016, 93(1): 7~20. 7. Xin Qi#, Shaojun Xie#, Yuwei Liu#, Fei Yi, Jingjuan Yu*. Genome-wide annotation of genes and noncoding RNAs of foxtail millet in response to simulated drought stress by deep sequencing. Plant molecular biology, 2013, 83(4-5): 459-473. 8. Chunjiang Yu#, Xin Qi#, Yuxin Lin, Yin Li, Bairong Shen*. iODA: An integrated tool for analysis of cancer pathway consistency from heterogeneous multi-omics data. Journal of Biomedical Informatics, 2020, 112: 103605. 9. Jing Peng, Xin Qi, Xiyang Chen, Nan Li, Jingjuan Yu*. ZmDof30 negatively regulates the promoter activity of the pollen-specific gene Zm908. Frontiers in Plant Science, 2017, 8: 685. 10. Fei Yi#, Shaojun Xie#, Yuwei Liu, Xin Qi, Jingjuan Yu*. Genome-wide characterization of microRNA in foxtail millet (Setaria italica). BMC plant biology, 2013, 13(1): 212. 11. Chen Liu, Xin Qi, Qiao Zhao, Jingjuan Yu*. Characterization and functional analysis of the potato pollen-specific microtubule-associated protein SBgLR in tobacco. PloS one, 2013, 8(3): e60543. |